I second on the bake from frozen. Although, you may not be able to prevent the bottom from getting soggy, you may be able to minimize it. Try baking on a preheated sheet pan or pizza stone.
I've done both (from frozen and thawed) but with apple crumble. If you bake from frozen, I'd suggest covering with foil for a while while it's baking so that the top doesn't brown too much. The risk of thawing first is that your topping gets too soggy to crisp up in the oven.
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